Commands to Monitor and Control Jobs on Eagle
Learn about a variety of Slurm commands to monitor and control jobs on Eagle.
Please see man pages for more information on the commands listed below. Also see --help or --usage.
Also see our Presentation on Advanced Slurm Features, which has supplementary information on how to manage jobs.
On Github, see another great resource for Slurm on Eagle.
| Command | Description |
|---|---|
| squeue | Show the Slurm queue. Users can specify JOBID or USER. |
|
Controls various aspects of jobs such as job suspension, re-queuing or resuming jobs and can display diagnostic info about each job. |
|
| scancel | Cancel specified job(s). |
| sinfo |
View information about all Slurm nodes and partitions. |
| sacct | Detailed information on accounting for all jobs and job steps. |
| sprio | View priority and the factors that determine scheduling priority. |
Usage Examples
squeue
$ squeue -u hpcuser
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
506955 gpu wait_tes hpcuser PD 0:00 1 (Resources)
$ squeue -l
Thu Dec 13 12:17:31 2018
JOBID PARTITION NAME USER STATE TIME TIME_LIMI NODES NODELIST(REASON)
516890 standard Job007 user1 PENDING 0:00 12:00:00 1050 (Dependency)
516891 standard Job008 user1 PENDING 0:00 12:00:00 1050 (Dependency)
516897 gpu Job009 user2 PENDING 0:00 04:00:00 1 (Resources)
516898 standard Job010 user3 PENDING 0:00 15:00:00 71 (Priority)
516899 standard Job011 user3 PENDING 0:00 15:00:00 71 (Priority)
-----------------------------------------------------------------------------
516704 standard Job001 user4 RUNNING 4:09:48 15:00:00 71 r1i0n[0-35],r1i1n[0-34]
516702 standard Job002 user4 RUNNING 4:16:50 15:00:00 71 r1i6n35,r1i7n[0-35],r2i0n[0-33]
516703 standard Job003 user4 RUNNING 4:16:57 15:00:00 71 r1i5n[0-35],r1i6n[0-34]
516893 standard Job004 user4 RUNNING 7:19 3:00:00 71 r1i1n35,r1i2n[0-35],r1i3n[0-33]
516894 standard Job005 user4 RUNNING 7:19 3:00:00 71 r4i2n[20-25],r6i6n[7-35],r6i7n[0-35]
516895 standard Job006 user4 RUNNING 7:19 3:00:00 71 r4i2n[29-35],r4i3n[0-35],r4i4n[0-20]
To estimate when your jobs will start to run, use the squeue --start command with the JOBID.
$ squeue --start -j 509851,509852
JOBID PARTITION NAME USER ST START_TIME NODES SCHEDNODES NODELIST(REASON)
509851 short test1.sh hpcuser PD N/A 100 (null) (Dependency)
509852 short test2.sh hpcuser PD 2018-12-19T16:54:00 1 r1i6n35 (Priority)
scontrol
To get detailed information about your job before and while it runs, you may use scontrol show job with the JOBID. For example:
$ scontrol show job 522616
JobId=522616 JobName=myscript.sh
UserId=hpcuser(123456) GroupId=hpcuser(123456) MCS_label=N/A
Priority=43295364 Nice=0 Account=csc000 QOS=normal
JobState=PENDING Reason=Dependency Dependency=afterany:522615
The scontrol command can also be used to modify pending and running jobs:
$ scontrol update jobid=526501 qos=high
$ sacct -j 526501 --format=jobid,partition,state,qos
JobID Partition State QOS
------------ ---------- ---------- ----------
526501 short RUNNING high
526501.exte+ RUNNING
526501.0 COMPLETED
To pause a job: scontrol hold <JOBID>
To resume a job: scontrol resume <JOBID>
To cancel and rerun: scontrol requeue <JOBID>
scancel
Use scancel -i <jobID> for an interactive mode to confirm each job_id.step_id before performing the cancel operation. Use scancel --state=PENDING,RUNNING,SUSPENDED -u <userid> to cancel your jobs by STATE or scancel -u <userid> to cancel ALL of your jobs.
sinfo
Use sinfo to view cluster information:
$ sinfo -o %A
NODES(A/I)
1580/514
Above, sinfo shows nodes Allocated (A) and nodes idle (I) in the entire cluster.
To see specific node information use sinfo -n <node id> to show information about a single or list of nodes. You will see the partition to which the node can allocate as well as the node STATE.
$ sinfo -n r105u33,r2i4n27
PARTITION AVAIL TIMELIMIT NODES STATE NODELIST
short up 4:00:00 1 drain r2i4n27
short up 4:00:00 1 down r105u33
standard up 2-00:00:00 1 drain r2i4n27
standard up 2-00:00:00 1 down r105u33
long up 10-00:00:0 1 drain r2i4n27
long up 10-00:00:0 1 down r105u33
bigmem up 2-00:00:00 1 down r105u33
gpu up 2-00:00:00 1 down r105u33
bigscratch up 2-00:00:00 0 n/a
ddn up 2-00:00:00 0 n/a
sacct
Use sacct to view accounting information about jobs AND job steps:
$ sacct -j 525198 --format=User,JobID,Jobname,partition,state,time,start,elapsed,nnodes,ncpus
User JobID JobName Partition State Timelimit Start Elapsed NNodes NCPUS
--------- ------------ ---------- ---------- ---------- ---------- ------------------- ---------- ------- --------
hpcuser 525198 acct_test short COMPLETED 00:01:00 2018-12-19T16:09:34 00:00:54 4 144
525198.batch batch COMPLETED 2018-12-19T16:09:34 00:00:54 1 36
525198.exte+ extern COMPLETED 2018-12-19T16:09:34 00:00:54 4 144
525198.0 bash COMPLETED 2018-12-19T16:09:38 00:00:00 4 4
sprio
By default, sprio returns information for all pending jobs. Options exist to display specific jobs by JOBID and USER.
$ sprio -u hpcuser
JOBID PARTITION USER PRIORITY AGE JOBSIZE PARTITION QOS
526752 short hpcuser 43383470 3733 179737 0 43200000
$ sprio -u hpcuser -n
JOBID PARTITION USER PRIORITY AGE JOBSIZE PARTITION QOS
526752 short hpcuser 0.01010100 0.0008642 0.0009747 0.0000000 0.1000000
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